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analysis:fourfit [2015/08/19 05:04] Jamie McCallum [Aedit] |
analysis:fourfit [2017/06/02 01:44] Jamie McCallum |
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A more concise version is included below: | A more concise version is included below: | ||
- | for i in $(cat /tmp/scans) ; do echo $i ; fourfit -c cf_1234 $i ; done | + | <code> |
+ | parallel fourfit -c cf_1234 ::: $(ls -d 12*) | ||
+ | </code> | ||
Once the fourfit processes are complete (15-30 minutes?), run alist with ''alist * '' and then edit the file with the following commands | Once the fourfit processes are complete (15-30 minutes?), run alist with ''alist * '' and then edit the file with the following commands | ||
sed -i 's/ 16383 / 1234 /g' alist.out | sed -i 's/ 16383 / 1234 /g' alist.out | ||
- | grep -v " LL " alist.out | grep -v " ii " | grep -v " HH " | grep -v " ee " | grep -v " xx " | grep -v " gg " | grep -v " TT " | grep -v " qq " | grep -v " WW " | grep -v " oo " > alist.ed.out | + | grep -v '0.000000 0.000 -1 -1' > alist.ed.out |
Download the skd file and reprocess it into an ovex file. NB - ''nskd_ovex.pl'' needs to have internet access - you'll need to define the proxy settings for most machines. | Download the skd file and reprocess it into an ovex file. NB - ''nskd_ovex.pl'' needs to have internet access - you'll need to define the proxy settings for most machines. | ||
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alist * | alist * | ||
sed -i 's/ 16383 / 1234 /g' alist.out | sed -i 's/ 16383 / 1234 /g' alist.out | ||
- | grep -v " LL " alist.out | grep -v " ii " | grep -v " HH " | grep -v " ee " | grep -v " xx " | grep -v " gg " | grep -v " TT " | grep -v " qq " | grep -v " WW " | grep -v " oo " > alist.ed.out | + | grep -v '0.000000 0.000 -1 -1' > alist.ed.out |